scientificprotocols authored about 8 years ago
Authors: Andrew Vaughan, Alexis Brumwell & Harold Chapman
A requirement for lineage analysis is tight temporal control of label induction. In the context of the tamoxifen-inducible cre/lox system, this means that there can be no residual tamoxifen to activate cre driven by promoters that might become upregulated over time or following injury. However, the protracted half-life of tamoxifen can allow recombination longer than generally appreciated. This protocol describes the appropriate “chase” times necessary to ensure accurate lineage analysis.
A requirement for lineage analysis is tight temporal control of label induction. In the context of the tamoxifen-inducible cre/lox system, this means that there can be no residual tamoxifen to activate cre driven by promoters that might become upregulated over time or following injury. However, the protracted half-life of tamoxifen can allow recombination longer than generally appreciated. This protocol incorporates the longer “chase” time necessary after tamoxifen administration in order to get meaningful fate mapping data.
Preparation and administration of tamoxifen will take approximately 1.5 hours. Plan to wait a minimum of 3 weeks after the final dose of tamoxifen before inducing injury.
Determine recombination efficiency in the appropriate control cell type depending on the gene of interest. We typically aim for >80% recombination.
Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury, Andrew E. Vaughan, Alexis N. Brumwell, Ying Xi, Jeffrey E. Gotts, Doug G. Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R. Looney, Michael A. Matthay, Jason R. Rock, and Harold A. Chapman, Nature 517 (7536) 621 - 625 doi:10.1038/nature14112
Andrew Vaughan, Alexis Brumwell & Harold Chapman, Chapman Lab, University of California - San Francisco
Correspondence to: Andrew Vaughan ([email protected]), Alexis Brumwell ([email protected]), Harold Chapman ([email protected])
Source: Protocol Exchange (2015) doi:10.1038/protex.2015.018. Originally published online 23 February 2015.