Genetics and Genomics Microbiology Proteomics

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Authors: Sriramulu Diraviam Dinesh


The artificial sputum medium (ASM) was formulated to mimic the sputum of cystic fibrosis (CF) patients. The intra- and inter-patient variation in the composition of highly viscous CF sputum complicates the achievement of a reproducible culture condition to study microbial biofilms, for example, Pseudomonas aeruginosa colonization in the CF lung. However, the ASM is a homogenous non-viscous medium, which can be prepared in bulk quantities using a fixed set of ingredients. The conventional biofilm models always had cells attached to a solid biotic or abiotic surface submerged in a steady-state or continuous flow of culture medium. In contrast, P. aeruginosa grows in the CF lung under micro-aerophilic to anaerobic conditions in the form of microcolonies eventually forming a macro-aggregate/colony in which bacteria adhere to each other and to sputum components. Similarly, in ASM, P. aeruginosa forms micro- and macro-colonies and showed various phenotypes specific to CF isolates.


Fig 1

Intact: intact biofilm in ASM, Disrupted: ASM-grown biofilm disrupted by repeated pipetting. No colouration in the crystal violet staining of the culture well shows that ASM-grown biofilm do not attach to the surface.


Ingredients for 1 litre of ASM:

  1. 5 g mucin from pig stomach mucosa (NBS Biologicals),
  2. 4 g low molecular-weight salmon sperm DNA (Fluka), 5.9 mg diethylene triamine pentaacetic acid (DTPA) (Sigma),
  3. 5 g NaCl (Sigma),
  4. 2.2 g KCl (Sigma),
  5. 1.81 g Tris base (Sigma),
  6. 5 ml egg yolk emulsion (Oxoid),
  7. 250 mg each of 20 amino acids (Sigma).

Note: 5 g/L casamino acids (Difco) can be used instead of 20 amino acids.


  1. Glasswares
  2. magnetic stirrer
  3. pH meter
  4. autoclave


  1. Take 800 ml of distilled water in a beaker and place it on a magnetic stirring plate.
  2. Use a magnetic stirrer to dissolve the ingredients completely.
  3. Add mucin, DNA, DTPA, salts NaCl and KCl, and Tris base one after another with constant stirring.
  4. Add 250 mg of each amino acid except tryptophan.
  5. Stir the mixture continuously to dissolve amino acids.
  6. Insert a calibrated pH probe and check the pH of the medium continuously with constant stirring.
  7. Adjust the pH using Tris base until it stabilizes at 7.0.
  8. Make up the volume of the medium to 1000 ml.
  9. Sterilize the medium in an autoclave at 110oC for 15 minutes.
  10. Cool the sterilized medium and add filter-sterilized tryptophan (250 mg/L of medium) from the stock.
  11. Add 5 ml of egg yolk emulsion.
  12. Maintain sterile conditions for steps 10 and 11.
  13. Mix the medium well and store in a refrigerator for several months.

Note: For preliminary/routine experiments, casamino acids could also be used at 5 g/L of medium, instead of individual amino acids.


Stabilization of pH is an important factor in the preparation of ASM due to the presence of amino acids.


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  2. Barth, A. L. and Pitt, T. L. The high amino-acid content of sputum from cystic fibrosis patients promotes growth of auxotrophic Pseudomonas aeruginosa. J Med Microbiol 45, 110–119 (1996).
  3. Ghani, M. and Soothill, J. S. Ceftazidime, gentamicin, and rifampicin, in combination, kill biofilms of mucoid Pseudomonas aeruginosa. Can J Microbiol 43, 999–1004(1997).
  4. Thomas, S. R. et. al. Increased sputum amino acid concentrations and auxotrophy of Pseudomonas aeruginosa in severe cystic fibrosis lung disease. Thorax 55, 795–797 (2000).
  5. Sriramulu, D. D. et al. Microcolony formation: a novel biofilm model of Pseudomonas aeruginosa for the cystic fibrosis lung. J. Med. Microbiol. 54: 667-676 (2005).
  6. Sriramulu, D. D. Amino acids enhance adaptive behaviour of Pseudomonas aeruginosa in the cystic fibrosis lung environment. Microbiology Insights. 3: 17-26 (2010).

Associated Publications

  1. Microcolony formation: a novel biofilm model of Pseudomonas aeruginosa for the cystic fibrosis lung, D. D Sriramulu, Journal of Medical Microbiology 54 (7) 667 - 676 01/07/2005 doi:10.1099/jmm.0.45969-0

Author information

Sriramulu Diraviam Dinesh, Division of Cell and Immune Biology, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany.

Correspondence to: Sriramulu Diraviam Dinesh ([email protected])

Source: Protocol Exchange (2010) doi:10.1038/protex.2010.212. Originally published online 24 December 2010.

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